MPI group Population genetics


Group leader

Beate St Pourcain

 

Post doc

Ellen Verhoef

Sanjeevan Jahagirdar

 

PhD students

Nicole Ng

Danielle Admiraal
 

MSc students

Pedro Alonso Gonzalez

Julia Niehaus

 

Research assistant

Lucía De Hoyos

 

Student assistant

Rafael Zampakas

 

Alumni

Chin Yang Shapland

Marjolein van Donkelaar 

Mariska Barendse 

Laurence Howe (co-supervision with University of Bristol, Professor George Davey Smith and Dr Sarah Lewis)

Janne Vermeulen 

Jeffrey van der Ven 

Mitchell Olislagers 

Celeste Figaroa 

Tanguy Rubat du Mérac

Simone van den Bedem

Fenja Schlag

Anh Nguyen

Paola Moreno Ancalmo

 

 

Displaying 141 - 160 of 15536
  • Casillas, M., Foushee, R., Méndez Girón, J., Polian, G., & Brown, P. (2024). Little evidence for a noun bias in Tseltal spontaneous speech. First Language, 44(6), 600-628. doi:10.1177/01427237231216571.

    Abstract

    This study examines whether children acquiring Tseltal (Mayan) demonstrate a noun bias – an overrepresentation of nouns in their early vocabularies. Nouns, specifically concrete and animate nouns, are argued to universally predominate in children’s early vocabularies because their referents are naturally available as bounded concepts to which linguistic labels can be mapped. This early advantage for noun learning has been documented using multiple methods and across a diverse collection of language populations. However, past evidence bearing on a noun bias in Tseltal learners has been mixed. Tseltal grammatical features and child–caregiver interactional patterns dampen the salience of nouns and heighten the salience of verbs, leading to the prediction of a diminished noun bias and perhaps even an early predominance of verbs. We here analyze the use of noun and verb stems in children’s spontaneous speech from egocentric daylong recordings of 29 Tseltal learners between 0;9 and 4;4. We find weak to no evidence for a noun bias using two separate analytical approaches on the same data; one analysis yields a preliminary suggestion of a flipped outcome (i.e. a verb bias). We discuss the implications of these findings for broader theories of learning bias in early lexical development.
  • Uluşahin, O., Bosker, H. R., McQueen, J. M., & Meyer, A. S. (2024). Knowledge of a talker’s f0 affects subsequent perception of voiceless fricatives. In Y. Chen, A. Chen, & A. Arvaniti (Eds.), Proceedings of Speech Prosody 2024 (pp. 432-436).

    Abstract

    The human brain deals with the infinite variability of speech through multiple mechanisms. Some of them rely solely on information in the speech input (i.e., signal-driven) whereas some rely on linguistic or real-world knowledge (i.e., knowledge-driven). Many signal-driven perceptual processes rely on the enhancement of acoustic differences between incoming speech sounds, producing contrastive adjustments. For instance, when an ambiguous voiceless fricative is preceded by a high fundamental frequency (f0) sentence, the fricative is perceived as having lower a spectral center of gravity (CoG). However, it is not clear whether knowledge of a talker’s typical f0 can lead to similar contrastive effects. This study investigated a possible talker f0 effect on fricative CoG perception. In the exposure phase, two groups of participants (N=16 each) heard the same talker at high or low f0 for 20 minutes. Later, in the test phase, participants rated fixed-f0 /?ɔk/ tokens as being /sɔk/ (i.e., high CoG) or /ʃɔk/ (i.e., low CoG), where /?/ represents a fricative from a 5-step /s/-/ʃ/ continuum. Surprisingly, the data revealed the opposite of our contrastive hypothesis, whereby hearing high f0 instead biased perception towards high CoG. Thus, we demonstrated that talker f0 information affects fricative CoG perception.
  • Zhou, H., Van der Ham, S., De Boer, B., Bogaerts, L., & Raviv, L. (2024). Modality and stimulus effects on distributional statistical learning: Sound vs. sight, time vs. space. Journal of Memory and Language, 138: 104531. doi:10.1016/j.jml.2024.104531.

    Abstract

    Statistical learning (SL) is postulated to play an important role in the process of language acquisition as well as in other cognitive functions. It was found to enable learning of various types of statistical patterns across different sensory modalities. However, few studies have distinguished distributional SL (DSL) from sequential and spatial SL, or examined DSL across modalities using comparable tasks. Considering the relevance of such findings to the nature of SL, the current study investigated the modality- and stimulus-specificity of DSL. Using a within-subject design we compared DSL performance in auditory and visual modalities. For each sensory modality, two stimulus types were used: linguistic versus non-linguistic auditory stimuli and temporal versus spatial visual stimuli. In each condition, participants were exposed to stimuli that varied in their length as they were drawn from two categories (short versus long). DSL was assessed using a categorization task and a production task. Results showed that learners’ performance was only correlated for tasks in the same sensory modality. Moreover, participants were better at categorizing the temporal signals in the auditory conditions than in the visual condition, where in turn an advantage of the spatial condition was observed. In the production task participants exaggerated signal length more for linguistic signals than non-linguistic signals. Together, these findings suggest that DSL is modality- and stimulus-sensitive.

    Additional information

    link to preprint
  • Bethke, S., Meyer, A. S., & Hintz, F. (2024). Developing the Individual Differences in Language Skills (IDLaS-DE) Test Battery—A new tool for German. Talk presented at Psycholinguistics in Flanders (PiF 2024). Brussels, Belgium. 2024-05-27 - 2024-05-28.
  • Cheung, C.-Y., Kirby, S., & Raviv, L. (2024). The role of gender, personality traits, and social biases in shaping linguistic accommodation: An experimental approach. Talk presented at the International Conference on the Evolution of Language (Evolang 2024). Madison, WI, USA. 2024-05-18 - 2024-05-21.
  • Hagoort, P. (2024). The toolkit for cognitive neuroscience [plenary talk]. Talk presented at the MEDAL Summer School in Experimental Linguistics 2024. Nijmegen, The Netherlands. 2024-06-17 - 2024-06-21.
  • Soheili-Nezhad, S., Schijven, D., Mars, R. B., Fisher, S. E., & Francks, C. (2024). Distinct impact modes of polygenic disposition to dyslexia in the adult brain. Poster presented at the FENS Forum 2024, Vienna, Austria.
  • De Heus, E., Eising, E., Fisher, S. E., De Jong, P. F., & Van Bergen, E. (2024). Disentangling dyslexia: towards early identification through biological and non-biological factors. Poster presented at the Highlights in the Language Sciences Conference 2024, Nijmegen, The Netherlands.
  • Ekerdt, C., Menks, W. M., Janzen, G., Kidd, E., Lemhöfer, K., McQueen, J. M., & Fernández, G. (2024). Does the way language knowledge accumulates over time change with age?. Poster presented at the Highlights in the Language Sciences Conference 2024, Nijmegen, The Netherlands.
  • Zhao, J., Martin, A. E., & Coopmans, C. W. (2024). Structural and sequential regularities modulate phrase-rate neural tracking. Scientific Reports, 14: 16603. doi:10.1038/s41598-024-67153-z.

    Abstract

    Electrophysiological brain activity has been shown to synchronize with the quasi-regular repetition of grammatical phrases in connected speech—so-called phrase-rate neural tracking. Current debate centers around whether this phenomenon is best explained in terms of the syntactic properties of phrases or in terms of syntax-external information, such as the sequential repetition of parts of speech. As these two factors were confounded in previous studies, much of the literature is compatible with both accounts. Here, we used electroencephalography (EEG) to determine if and when the brain is sensitive to both types of information. Twenty native speakers of Mandarin Chinese listened to isochronously presented streams of monosyllabic words, which contained either grammatical two-word phrases (e.g., catch fish, sell house) or non-grammatical word combinations (e.g., full lend, bread far). Within the grammatical conditions, we varied two structural factors: the position of the head of each phrase and the type of attachment. Within the non-grammatical conditions, we varied the consistency with which parts of speech were repeated. Tracking was quantified through evoked power and inter-trial phase coherence, both derived from the frequency-domain representation of EEG responses. As expected, neural tracking at the phrase rate was stronger in grammatical sequences than in non-grammatical sequences without syntactic structure. Moreover, it was modulated by both attachment type and head position, revealing the structure-sensitivity of phrase-rate tracking. We additionally found that the brain tracks the repetition of parts of speech in non-grammatical sequences. These data provide an integrative perspective on the current debate about neural tracking effects, revealing that the brain utilizes regularities computed over multiple levels of linguistic representation in guiding rhythmic computation.
  • Joshi, A., Mohanty, R., Kanakanti, M., Mangla, A., Choudhary, S., Barbate, M., & Modi, A. (2024). iSign: A benchmark for Indian Sign Language processing. In L.-W. Ku, A. Martins, & V. Srikumar (Eds.), Findings of the Association for Computational Linguistics ACL 2024 (pp. 10827-10844). Bangkok, Thailand: Association for Computational Linguistics.

    Abstract

    Indian Sign Language has limited resources for developing machine learning and data-driven approaches for automated language processing. Though text/audio-based language processing techniques have shown colossal research interest and tremendous improvements in the last few years, Sign Languages still need to catch up due to the need for more resources. To bridge this gap, in this work, we propose iSign: a benchmark for Indian Sign Language (ISL) Processing. We make three primary contributions to this work. First, we release one of the largest ISL-English datasets with more than video-sentence/phrase pairs. To the best of our knowledge, it is the largest sign language dataset available for ISL. Second, we propose multiple NLP-specific tasks (including SignVideo2Text, SignPose2Text, Text2Pose, Word Prediction, and Sign Semantics) and benchmark them with the baseline models for easier access to the research community. Third, we provide detailed insights into the proposed benchmarks with a few linguistic insights into the working of ISL. We streamline the evaluation of Sign Language processing, addressing the gaps in the NLP research community for Sign Languages. We release the dataset, tasks and models via the following website: https://exploration-lab.github.io/iSign/

    Additional information

    dataset, tasks, models
  • Dang, A., Raviv, L., & Galke, L. (2024). Morphology matters: Probing the cross-linguistic morphological generalization abilities of large language models through a Wug Test. Poster presented at the 13th edition of the Workshop on Cognitive Modeling and Computational Linguistics (CMCL 2024), Bangkok, Thailand.
  • Wang, J., Schiller, N. O., & Verdonschot, R. G. (2024). Morphological encoding in language production: Electrophysiological evidence from Mandarin Chinese compound words. PLOS ONE, 19(10): e0310816. doi:10.1371/journal.pone.0310816.

    Abstract

    This study investigates the role of morphology during speech planning in Mandarin Chinese. In a long-lag priming experiment, thirty-two Mandarin Chinese native speakers were asked to name target pictures (e.g., “山” /shan1/ "mountain"). The design involved pictures referring to morpheme-related compound words (e.g., “山羊” /shan1yang2/ "goat") sharing a morpheme with the first (e.g., “山” /shan1/ "mountain") or the second position of the targets (e.g., 脑 /nao3/ “brain” with prime电脑 /dian4nao3/ “computer”), as well as unrelated control items. Behavioral and electrophysiological data were collected. Interestingly, the behavioral results went against earlier findings in Indo-European languages, showing that the target picture naming was not facilitated by morphologically related primes. This suggests no morphological priming for individual constituents in producing Mandarin Chinese disyllabic compound words. However, targets in the morpheme-related word condition did elicit a reduced N400 compared with targets in the morpheme-unrelated condition for the first position overlap in the ERP analyses but not for the second, suggesting automatic activation of the first individual constituent in noun compound production. Implications of these findings are discussed.

    Additional information

    table 1 table 2 table 3 figure
  • Kendrick, K. H., & Holler, J. (2024). Conversation. In M. C. Frank, & A. Majid (Eds.), Open Encyclopedia of Cognitive Science. Cambridge: MIT Press. doi:10.21428/e2759450.3c00b537.
  • Alvarez van Tussenbroek, I. (2024). Neotropical bat species: An exploration of brain morphology and genetics. PhD Thesis, Leiden University, Leiden.
  • Schijven, D., Soheili-Nezhad, S., Fisher, S. E., & Francks, C. (2024). Exome-wide analysis implicates rare protein-altering variants in human handedness. Nature Communications, 15: 2632. doi:10.1038/s41467-024-46277-w.

    Abstract

    Handedness is a manifestation of brain hemispheric specialization. Left-handedness occurs at increased rates in neurodevelopmental disorders. Genome-wide association studies have identified common genetic effects on handedness or brain asymmetry, which mostly involve variants outside protein-coding regions and may affect gene expression. Implicated genes include several that encode tubulins (microtubule components) or microtubule-associated proteins. Here we examine whether left-handedness is also influenced by rare coding variants (frequencies ≤ 1%), using exome data from 38,043 left-handed and 313,271 right-handed individuals from the UK Biobank. The beta-tubulin gene TUBB4B shows exome-wide significant association, with a rate of rare coding variants 2.7 times higher in left-handers than right-handers. The TUBB4B variants are mostly heterozygous missense changes, but include two frameshifts found only in left-handers. Other TUBB4B variants have been linked to sensorineural and/or ciliopathic disorders, but not the variants found here. Among genes previously implicated in autism or schizophrenia by exome screening, DSCAM and FOXP1 show evidence for rare coding variant association with left-handedness. The exome-wide heritability of left-handedness due to rare coding variants was 0.91%. This study reveals a role for rare, protein-altering variants in left-handedness, providing further evidence for the involvement of microtubules and disorder-relevant genes.
  • De Gregorio, C., Raimondi, T., Bevilacqua, V., Pertosa, C., Valente, D., Carugati, F., Bandoli, F., Favaro, L., Lefaux, B., Ravignani, A., & Gamba, M. (2024). Isochronous singing in 3 crested gibbon species (Nomascusspp.). Current Zoology, 70(3), 291-297. doi:10.1093/cz/zoad029.

    Abstract

    The search for common characteristics between the musical abilities of humans and other animal species is still taking its first steps. One of the most promising aspects from a comparative point of view is the analysis of rhythmic components, which are crucial features of human communicative performance but also well-identifiable patterns in the vocal displays of other species. Therefore, the study of rhythm is becoming essential to understand the mechanisms of singing behavior and the evolution of human communication. Recent findings provided evidence that particular rhythmic structures occur in human music and some singing animal species, such as birds and rock hyraxes, but only 2 species of nonhuman primates have been investigated so far (Indri indri and Hylobates lar). Therefore, our study aims to consistently broaden the list of species studied regarding the presence of rhythmic categories. We investigated the temporal organization in the singing of 3 species of crested gibbons (Nomascus gabriellae, Nomascus leucogenys, and Nomascus siki) and found that the most prominent rhythmic category was isochrony. Moreover, we found slight variation in songs’ tempo among species, with N. gabriellae and N. siki singing with a temporal pattern involving a gradually increasing tempo (a musical accelerando), and N. leucogenys with a more regular pattern. Here, we show how the prominence of a peak at the isochrony establishes itself as a shared characteristic in the small apes considered so far.
  • Melnychuk, T., Galke, L., Seidlmayer, E., Bröring, S., Förstner, K. U., Tochtermann, K., & Schultz, C. (2024). Development of similarity measures from graph-structured bibliographic metadata: An application to identify scientific convergence. IEEE Transactions on Engineering Management, 71, 9171 -9187. doi:10.1109/TEM.2023.3308008.

    Abstract

    Scientific convergence is a phenomenon where the distance between hitherto distinct scientific fields narrows and the fields gradually overlap over time. It is creating important potential for research, development, and innovation. Although scientific convergence is crucial for the development of radically new technology, the identification of emerging scientific convergence is particularly difficult since the underlying knowledge flows are rather fuzzy and unstable in the early convergence stage. Nevertheless, novel scientific publications emerging at the intersection of different knowledge fields may reflect convergence processes. Thus, in this article, we exploit the growing number of research and digital libraries providing bibliographic metadata to propose an automated analysis of science dynamics. We utilize and adapt machine-learning methods (DeepWalk) to automatically learn a similarity measure between scientific fields from graphs constructed on bibliographic metadata. With a time-based perspective, we apply our approach to analyze the trajectories of evolving similarities between scientific fields. We validate the learned similarity measure by evaluating it within the well-explored case of cholesterol-lowering ingredients in which scientific convergence between the distinct scientific fields of nutrition and pharmaceuticals has partially taken place. Our results confirm that the similarity trajectories learned by our approach resemble the expected behavior, indicating that our approach may allow researchers and practitioners to detect and predict scientific convergence early.
  • Kocsis, K., Düngen, D., Jadoul, Y., & Ravignani, A. (2024). Harbour seals use rhythmic percussive signalling in interaction and display. Animal Behaviour, 207, 223-234. doi:10.1016/j.anbehav.2023.09.014.

    Abstract

    Multimodal rhythmic signalling abounds across animal taxa. Studying its mechanisms and functions can highlight adaptive components in highly complex rhythmic behaviours, like dance and music. Pinnipeds, such as the harbour seal, Phoca vitulina, are excellent comparative models to assess rhythmic capacities. Harbour seals engage in rhythmic percussive behaviours which, until now, have not been described in detail. In our study, eight zoo-housed harbour seals (two pups, two juveniles and four adults) were passively monitored by audio and video during their pupping/breeding season. All juvenile and adult animals performed percussive signalling with their fore flippers in agonistic conditions, both on land and in water. Flipper slap sequences produced on the ground or on the seals' bodies were often highly regular in their interval duration, that is, were quasi-isochronous, at a 200–600 beats/min pace. Three animals also showed significant lateralization in slapping. In contrast to slapping on land, display slapping in water, performed only by adult males, showed slower tempo by one order of magnitude, and a rather motivic temporal structure. Our work highlights that percussive communication is a significant part of harbour seals' behavioural repertoire. We hypothesize that its forms of rhythm production may reflect adaptive functions such as regulating internal states and advertising individual traits.
  • Eekhof, L. S., & Mar, R. A. (2024). Does reading about fictional minds make us more curious about real ones? Language and Cognition, 16(1), 176-196. doi:10.1017/langcog.2023.30.

    Abstract

    Although there is a large body of research assessing whether exposure to narratives boosts social cognition immediately afterward, not much research has investigated the underlying mechanism of this putative effect. This experiment investigates the possibility that reading a narrative increases social curiosity directly afterward, which might explain the short-term boosts in social cognition reported by some others. We developed a novel measure of state social curiosity and collected data from participants (N = 222) who were randomly assigned to read an excerpt of narrative fiction or expository nonfiction. Contrary to our expectations, we found that those who read a narrative exhibited less social curiosity afterward than those who read an expository text. This result was not moderated by trait social curiosity. An exploratory analysis uncovered that the degree to which texts present readers with social targets predicted less social curiosity. Our experiment demonstrates that reading narratives, or possibly texts with social content in general, may engage and fatigue social-cognitive abilities, causing a temporary decrease in social curiosity. Such texts might also temporarily satisfy the need for social connection, temporarily reducing social curiosity. Both accounts are in line with theories describing how narratives result in better social cognition over the long term.

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